What Daedalus told Darwin – References



Abzhanov, A., Kuo, WP, Hartmann, C., Grant, BR, Grant, PR, Tabin, CJ. 2006. The calmodulin pathway and evolution of elongated beak morphology in Darwin’s finches.Nature 442(7102):563-7.

Adami, Christoph. 1998. Introduction to Artificial Life. Berlin: Springer-Verlag.

Aktipis, C. Athena. 2000. The Effect of Behavioral Assortment on Selection Dynamics: Externalities, Information Processing and Subjective Commitment.Artificial Life 7 Workshop Proceedings.

Allaby, Michael. 1994. The Concise Oxford Dictionary of Ecology. Oxford, N.Y.: Oxford University Press.

Alon, U. 2003. Biological Networks: The tinkerer as engineer. Science 301: 1866.

Altenberg, Lee. 2000. “Evolvability Checkpoints Against Evolutionary Pathologies.”Artificial Life 7 Workshop Proceedings.

Appenzeller, Tim. 1999. Test Tube Evolution Catches Time in a Bottle: By running experiments on microbes for thousands of generations, researchers are exploring the roles of chance and history in evolution. American Association for the Advancement of Science. Science 284: 2108-2110.

Artificial Life II. 1992. Ed. Langton, C.G., C. Taylor, J.D. Farmer, and S. Rasmussen. Redwood, CA: Addison-Wesley.

Artificial Life IV. 1994. Ed. M. Sipper, G. Tempesti, D. Mange, and E. Sanchez, editors. Cambridge MA: Bradford Books, M.I.T. Press.

Artificial Life VI, 1998. Ed. C. Adami. R.K. Belew, H. Kitano, and C.E. Taylor. Cambridge, MA: M.I.T. Press.

Artificial Life VII.  2000. Ed. Mark A. Bedau, John S. McCaskill, Norman H. Packard, and Steen Rasmussen. Cambridge, MA: Bradford Books, M.I.T. Press.

Artificial Life 7 Workshop Proceedings. 2000. Ed. Carlo C. Maley and Eilis Boudreau.

Artificial Life VIII 2002. Proceedings of the Eighth International Conference on Artificial Life. Ed. Russell K. Standish, Mark A. Bedau, and Hussein A. Abbass. Cambridge, MA: Bradford Books, M.I.T. Press.

Artificial Life IX 2004. Proceedings of the Ninth International Conference on the Simulation and Synthesis of Living Systems. Ed. Jordan Pollack, Mark Bedau, Phil Husbands, Takashi Ikegami, and Richard A. Watson. Cambridge, MA: Bradford Books, M.I.T. Press.

Artificial Life X 2006. Proceedings of the Tenth International Conference on the Simulation and Synthesis of Living Systems. Ed. Luis M. Rocha, Larry M. Yaeger, Mark A. Bedau, Dario Floreano, Robert L. Goldstone, and Alessandro Vespignani. Cambridge, MA: Bradford Books, M.I.T. Press.

Axelrod, Robert and William D. Hamilton. 1981. The Evolution of Cooperation.Science, New Series. 211:4489. Mar. 27. 1390-1396.

Axelrod, Robert. 1984. The Evolution of Cooperation. N.Y.: Basic Books.

_______. 1997. The Complexity of Cooperation: Agent-Based Models of Competition and Collaboration. Princeton University Press.

Ayala, Francisco J. and Theodosius Dobzhansky, eds. 1974. Studies in the Philosophy of Biology: Reduction and Related Problems. University of California Press.

Ayala, Francisco J. and Walter M. Fitch. 1997. Genetics and the origin of species: An introduction. PNAS  July 22.   vol. 94  no. 15  7691-7697.

_______. 2010. Am I a Monkey: Six Big Questions About Evolution. Johns Hopkins University Press: Baltimore, MD, USA.

Babbage, Charles. 1838. Ninth Bridgwater Treatise. 2nd edn. London: John Murray.

Babbage, Charles. 1899.  Babbage’s Calculating Engines, vol II., Charles Babbage Institute Reprint Series for the History of Computing, London: Clowes and Sons.

Bak, Per. 1996. How Nature Works: The Science of Self-Organized Criticality. N.Y.: Copernicus-Springer-Verlag.

Baldwin, J.M. 1896. A New Factor in Evolution. American Naturalist. 30. 441-451.

Barr, Avron, Paul R. Cohen and Edward A. Feigenbaum. Editors. 1989. The Handbook of Artificial Intelligence. IV. Addison-Wesley Publishing Company Inc.

Bateson, William. 1894. Materials for the study of variation: treated with special regard to discontinuity in the origin of species. London: Macmillan and Co.

Bechtel, William and George Graham. 1998. A Companion to Cognitive Science, Oxford: Blackwell.

Mark A. Bedau and Robert Seymour. 1994. Adaptation of Mutation Rates in a Simple Model of Evolution. In: Complex Systems: Mechanism of Adaptation. Ed. RJ Stonier and XH Yu. IOS Press.

Bedau, M.A., McCaskill, J.S., Packard, N.H., Rasmussen S., Adami, C, Green, D.G., Ikegami, T. Kaneko, K., Ray, T. S. 2000. Open problems in artificial life. Artificial Life. 6(4):363 – 376.

Bedau, Mark and Norman Packard. 2003. “Evolution of Evolvability via adaptation of mutation rates.” Biosystems. 69:143-162.

Bedau, M.A. 1996. “The nature of life.” In M. Boden. Ed. The Philosophy of Artificial Life. Oxford University Press. 332 – 357.

_______. 1997a. “Weak Emergence.” Philosophical Perspectives. 11:375 – 399.

_______. 1997b. “Emergent Models of Supple Dynamics in Life and Mind.” Brain and Cognition. 11:5 – 27.

_______. 1998. “Philosophical Content and Method of Artificial Life” in T. W. Bynam and J. H. Moor, eds., The Digital Phoenix: How Computers are Changing Philosophy. London: Basil Blackwell. 135-152.

Behe, Michael J. 1996. Darwin’s Black Box: The Biochemical Challenge to Evolution. N.Y.: Simon and Schuster.

Ben-Jacob, E. 2003. Bacterial self-organization: co-enhancement of complexification and adaptability in a dynamic environment. Phil. Trans. R. Soc. Lond. A. 361:1283-1312.

Ben-Jacob, E. Aharonov, Y. and Shapira, Y. 2005. Bacteria harnessing complexity. Biofilms 1. 239-263.

Ben Jacob, E. Shapira, Y., Tauber, A. 2006. Seeking the foundations of cognition in bacteria: from Schrodinger’s negative entropy to latent information. Physica A 359. 495-524.

Bentley, Molly. “Space robot 2.0: Smarter than the average rover.” New Scientist. 14 September 2009.

Bernal, J.D. 1951. The Physical Basis for Life. London: Routledge and Kegan Paul.

Bhushan, Nalini and Stuart Rosenfeld Editors. 2000. Of Minds and Molecules: New Philosophical Perspectives on Chemistry. Oxford University Press.

David Biello and Katherine Harmon. 2010. Tools for Life: What’s Next for Cells Powered by Synthetic Genomes? Scientific American. August.

Boghossian, Paul A. 1998. “What the Sokal Hoax Ought to Teach Us”.  Koertge, Noretta, ed. A House Built on Sand: Exposing Postmodernist Myths About Science. Oxford University Press.

Bongard, Josh C. and Lipson, Hod. 2004. “Once More Unto the Breach: Co-evolving a Robot and its Simulator.” Artificial Life IX.

Boucher, Douglas A. 1985. Ed. The biology of mutualism: Ecology and Evolution. Oxford University Press.

Bowler, P .J. 1984. Evolution – the History of an Idea. Berkeley: University of California Press.

Boyd, R. and P.J. Richardson. 1988. The evolution of reciprocity in sizable groups. J. Theoretical Biology. June 7; 132 (3): 337-56.

Brent, Joseph. Charles Sanders Peirce, A Life. Indiana University Press. 1993.

Broad, C. D. and Lewy, C. 1975. Leibniz: An Introduction. London: Cambridge University Press.

Bronowski, Jacob. 1974.The Ascent of Man. Boston: Little Brown.

_______. 1977. A Sense of the Future. Cambridge: M.I.T. Press. 186-8.

_______. 1978. The Origins of Knowledge and Imagination. Silliman Lectures at Yale University in 1967. Yale University Press.

Brooks, Rodney. 2000 [1991]. Intelligence Without Representation. In John Haugeland Ed. Mind Design II.

_______. 2001. The relationship between matter and life. Nature. 409:409-11. 18 January.

Brown, Kenneth A. 1988. Interview with Maxime Faget. Inventors at Work. Redmond, WA: Microsoft Press.

Brumfiel, G. 2006. Our Universe: outrageous fortune. Nature 429: 10 – 12.

Buchanan, Andrew, Mark Triant, and Mark A. Bedau. 2004. “The Flexible Balance of Evolutionary Novelty and Memory in the Face of Environmental Catastrophes.”Artificial Life IX.

Bunnin, Nicholas and E.P. Tsui-James ed. 1996. Blackwell Companion to Philosophy. Oxford: Blackwell.

Burkhardt, Richard Wellington. 1977. The Spirit of System: Lamarck and Evolutionary Biology. Harvard University Press.

Bush, Vannevar. 1945. “As We May Think.” The Atlantic Monthly. July.

Buss, Leo. 1997. The Evolution of Individuality. Princeton University Press.

Cairns, J., J. Overbaugh, and S. Miller. 1988. The Origin of Mutants. Nature. 335:142 – 145.

Cairns-Smith, A.G. 1982. Genetic Takeover. Cambridge University Press.

_______. 1984. “On the Rocks: the vital cocktail” in Nash, Sara, Editor. Science and Uncertainty. Proceedings of a Conference held under the auspices of IBM United Kingdom Ltd. London. March IBM United Kingdom Ltd. 25 – 42.

_______. 1996. Evolving the Mind: on the nature of matter and the origin of consciousness. Cambridge University Press.

Calvin, William H. 1994. The Emergence of Intelligence. Scientific American. Life in the Universe Special Issue. 271(4):100-107. October.

_______. 1996. How Brains Think: Evolving Intelligence, Then and Now. NY: BasicBooks. A Science Masters book.

_______. 2004. A Brief History of the Mind. Oxford University Press.

Campbell, Anthony K. 2003. “What Darwin Missed.” Astrophysics and Space Science.285: 571 – 585.

Campbell, D. T. 1960. Blind variation and selective retention in creative thought as in other knowledge processes. Psychological Review. 67: 380 – 400.

Chaitin, Gregory. 2005. Meta Math! N.Y.: Pantheon.

Chen, C. T. A. and E. T. Drake. 1986. Carbon Dioxide Increase in the Atmosphere and Oceans and Possible Effects on Climate. Annual Review of Earth and Planetary Sciences. vol. 14: 201-235. May.

Churchland, Paul. 1984. Matter and Consciounesss. Cambridge, MA: M.I.T. Press.

_______. 1985. Images of Science: Scientific Realism versus Constructive Empiricism. University of Chicago Press.

_______. 1989. A Neurocomputational Perspective: The Nature of Mind and the Structure of Science. MIT Press.

_______. 1995. The Engine of Reason, The Seat of the Soul: A Philosophical Journey into the Brain. MIT Press.

Corning, Peter A. The Co-Operative Gene: On The Role of Synergy in Evolution.Evolutionary Theory. 11. 1996: 183 – 207.

_______. 1998. The Synergism Hypothesis: On the Concept of Synergy and its Role in the Evolution of Complex Systems. Journal of Social and Evolutionary Systems. 21(2).

_______. 2003. Nature’s Magic: Synergy in Evolution and the Fate of Mankind. Cambridge University Press.

_______. 2005. Holistic Darwinism: Synergy, Cybernetics, and the Bioeconomics of Evolution. University of Chicago Press.

Crick, Francis H.C. 1981. Life Itself: Its Order and Nature. N.Y.: Simon and Schuster.

_______. What Mad Pursuit: A Personal View of Scientific Discovery. NY: Basic Books. 1988.

Crick, Francis. 1994. The Astonishing Hypothesis: The Scientific Search for the Soul.New York: Charles Scribner’s Sons.

Crist, Eileen. 2010. Concerned with Trifles? A Geophysical Reading of Charles Darwin’s Last Book. In Gaia in Turmoil: Climate Change, Biodepletion, and Earth Ethics in an Age of Crisis. 2010. ed. Crist, Eileen, H. Bruce Rinker, Foreword Bill McKibben. MIT Press. 161-173.


Danos, V., J. Feret, W. Fontana, R. Harmer and J. Krivine. 2009. Rule-based Modelling and Model Perturbation. Transactions on Computational Systems Biology. 11:116-137.

Darwin, Charles R. 1859 [1872]. Origin of Species. Sixth edition. Chapter XV. “Recapitulation and conclusion.” For reference to changes in the various editions, seeThe Origin of Species: A Variorum Text 1959. Ed. Morse Peckham. Philadelphia: University of Pennsylvania Press.

_______. 1868. The variation of animals and plants under domestication. London: John Murray.

_______. 1985 [1871]. Correspondence of Charles Darwin. Eds. Frederick Burkhardt and Sydney Smith. Cambridge University Press.

_______. 1883. [1871]. The Descent of Man and Selection in Relation to Sex. NY: D. Appleton and Co.

_______. 1888. Ed. Francis Darwin. The Life and Letters of Charles Darwin. 2. NY: D. Appleton and Co.

_______. XII. Geographical Distribution: Means of Dispersal. On the Origin of Species. The Harvard Classics.  1909 – 14.

_______. 1958. The autobiography of Charles Darwin 1809-1882. With the original omissions restored. Edited and with appendix and notes by his grand-daughter Nora Barlow. London: Collins.

Davies, Paul. 1988. The Cosmic Blueprint: New Discoveries in Nature’s Creative Ability to Order the Universe, N.Y.: Simon and Schuster.

_______. 1999.  The Fifth Miracle. N.Y.: Simon and Schuster.

Dawkins, Richard. 1976. The Selfish Gene. Oxford University Press.

_______. 1982. The Extended Phenotype: The Long Reach of the Gene. Oxford University Press.

_______. 1996[1986]. The Blind Watchmaker: Why the Evidence of Evolution Reveals a Universe Without Design. London: W.W. Norton. ISBN 0-393-31570-3.

_______. 1995. River Out of Eden: A Darwinian View of Life. NY: Basic Books. Science Masters Series.

_______. 1995. “Where d’you get those peepers?New Statesman and Society. Vol. 8. June 16. 29.

de Duve, Christian. 1995a. Vital Dust: The Origin and Evolution of Life on Earth. N.Y.: Basic Books.

_______. 1995b. The Beginnings of Life on Earth. The American Scientist. Sept. – Oct.

_______. 2002. Closing Plenary. ISSOL 2002.

_______. 2002. Life Evolving: Molecules, Mind, and Meaning. NY: Oxford University Press.

_______. 2005. The onset of selection. Nature. 433:581-582

_______. 2005. Singularities: Landmarks on the Pathways of Life. Cambridge, UK: Cambridge University Press.

Dembski, William and Michael Ruse. Eds. 2004. Debating Design: From Darwin to DNA. Cambridge University Press.

Dennett, Daniel. 1984. Elbow Room. Cambridge, MA: Bradford Books Division: M.I.T. Press.

_______. 1995 Darwin’s Dangerous Idea. N.Y.: Touchstone. Simon and Schuster.

Depuy, J. P. 2000. The Mechanization of Mind: On the Origins of Cognitive Science. Princeton: Princeton University Press.

De Robertis, E. M. et al. 2001. Molecular mechannisms of cell-cell signaling by the Spehmann-Mangold organizer. International Journal of Developmental Biology. 45: 189.

Descartes, Rene. 1985. The Philosophical Writings of Descartes. 3 vols. Eds. John Cottingham, Robert Stoothoff, Dugald Murdoc. Cambridge University Press.
[1637]. Discourse on the Method.
[1644]. Principles of Philosophy.
[1628, 1701]. Rules for the Direction of the Mind.

Desmond, Adrian. 1997. Huxley: From Devil’s Disciple to Evolution’s High Priest. Addison-Wesley.

Desmond, Adrian J. and James Richard Moore. 2009. Darwin’s sacred cause: how a hatred of slavery shaped Darwin’s views on human evolution. Houghton Mifflin Harcourt.

Detrain, C., J.L. Deneubourg, and J.M. Pasteels. Eds. 1999. Information Processing in Social Insects. Basel: Birkhauser.

Di Caro, G. and M. Dorigo. 1998. Ant Colonies for Adaptive Packet Routing in Packet-switched Communications Networks. Proceedings of the 5th International Conference PPSN. Berlin:  Springer.

Diamond, Jared. 1996. Guns, Germs, and Steel. N. Y.: W.W. Norton.

Dicke, S.J. 1998. Life on Other Worlds: The 20th Century Extraterrestrial Debate. Cambridge University Press.

Dictionary of Philosophy of Mind.http://www.artsci.wustl.edu/~philos/MindDict/emergence.html

Di Paolo, E. A. 2000. Searching for Rhythms in Random Boolean Networks. Artificial Life VII.

Dorin, Alan. 2000. Creating a Physically-based, Virtual Metabolism with Solid Cellular Automata. Artificial Life VII.

Downing, Keith and Peter Zvirinsky. 1999. The Simulated Evolution of Biochemical Guilds: Reconciling Gaia Theory and Natural Selection. Artificial Life Journal. vol. 4. Cambridge: MIT Press.

Downing, Keith. 2000. Exploring Gaia Theory: Artificial Life on a Planetary Scale.Artificial Life Journal. vol. 5.  Cambridge: MIT Press.

Dreyfus, Hubert. 1991. Being-in-the-World: A Commentary on Heidegger’s Being and Time, Division I. Cambridge: M.I.T. Press.

_______. 1997. “Artificial Intelligence” in Embree, Lester et. al. eds. Encyclopedia of Phenomenology, Boston, Dordrecht, London: Kluwer Publishers.  34-39.

Dupré, John. 1993. The Disorder of Things: Metaphysical Foundations of the Disunity of Science. Cambridge, MA. Harvard University Press.

Durrell, Lawrence. 1961. Justine. Boston: E.P. Dutton.

Dyson, Freeman. 1992. From Eros to Gaia. N.Y. Pantheon.

_______. 2005. The Darwinian Interlude: Biotechnology will do away with species. Good: cultural evolution is better than natural selection. MIT Technology Review. March.

Dyson, George. 1998. Darwin Among the Machines: The Evolution of Global Intelligence. Cambridge, MA: Perseus Books.

Earle, Sylvia. 1995. Sea Change. G.P. Putnam and Sons.

Eckardt, Lars Henning; Naumann, Kai; Matthias Pankau, Wolf; Rein, Michael; Schweitzer, Markus; Windhab, Norbert; von Kiedrowski, Guenter. 2002. DNA nanotechnology: chemical copying of connectivity. Nature. London, United Kingdom.420 (6913). 286.

Edelman, Gerald. 1987. Neural Darwinism: The Theory of Neuronal Group Selection. NY: Basic Books.

Eddington, Arthur. 1939. The Philosophy of Physical Science, N.Y.: The Macmillan Co.

Ehrlich, P.R. & Raven, P.H. 1964. Butterflies and plants: a study in coevolution.Evolution: 586-608.

Eigen, M. 1971. “Selforganization of matter and evolution of biological Macromolecules.” Naturwissenschaften 58 (10): 465. doi:10.1007/BF00623322

Eigen, Manfred and Ruthild Winkler. 1981. Laws of the Game: How the Principles of Nature Govern Chance. N.Y.: Knopf.

Eigen, Manfred. 1992. Steps towards Life. N.Y.: Oxford University Press.

Eldredge, Niles. 1971. “The Allopatric Model and Phylogeny in Paleozoic Invertebrates” Evolution. Vol. 25. March 31.

Eldredge, N. and Gould, S.J. 1972. “Punctuated equilibria: an alternative to phyletic gradualism” in Models in paleobiology. Ed. by Schopf, TJM Freeman, Cooper & Co. Doubleday. San Francisco. 82 – 115.

Eldredge, Niles. 1979. “Alternative Approaches to Evolutionary Theory.” Carnegie Museum of Natural History. Bulletin #13.

Eldredge, N., and S.N. Salthe. 1984. Hierarchy and evolution. In Oxford Surveys in Evolutionary Biology, Volume 1, ed. R. Dawkins and M. Ridley. Oxford University Press. 184 – 208.

Eldredge, Niles. 1985. Unfinished Synthesis: Biological hierarchies and modern evolutionary thought. Oxford University Press.

_______. 1995a. Reinventing Darwin: The Great Debate at the High Table of Evolutionary Theory.  N.Y.: John Wiley & Sons.

Eldredge, Niles. 1995b. “Undreamt Philosophies.” Foreword to Lynn Margulis and Dorion Sagan. What is Life? N.Y.: Simon and Schuster.

_______. 1999. The Pattern of Evolution. N.Y.: W.H. Freeman and Company.

_______. 2005. Darwin: Discovering the tree of Life. N.Y.: W.W. Norton and Company.

_______. 2006. “Confessions of a Darwinist.” Virginia Quarterly Review.

Eldredge, Niles and Stefano Dominici. 2010. “A Matter of Individuality: Hierarchy Theory at the Dawn of Evolutionary Biology.” Fifth Biennial International Meeting on the Philosophical, Epistemological, and Methodological Implications of Complexity Theory. Havana, Cuba. January.

Ehrlich, Paul and Peter Raven. 1964. “Butterflies and plants: a study in coevolution.”Evolution. 18. 586-608.

Eliot, T.S. 1963. Collected Poems, 1909 – 1962. London: Faber and Faber.

Fausto-Sterling, A. 1993. Is Nature Really Red in Tooth and Claw? Discover. 14:24 – 27.

Feller, Christia, George G. Brown, Eric Blanchart, Pierre Deleporte and Sergey S. Chernyanskii. 2003. Charles Darwin, earthworms and the natural sciences: various lessons from past to future. Agriculture, Ecosystems & Environment. Volume 99. Issues 1-3, October. 29-49.

Feyerabend, Paul. 1987. Farewell to Reason. London, N.Y.: Verso.

Fine, Arthur. 1984. “The Natural Ontological Attitude” in J. Leplin, ed. Scientific Realism. Berkeley: University of California Press.

Fisher, R. 1930. The Genetical Theory of Natural Selection. Clarendon Press, Oxford.

Fitch, W.M. 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Systematic Zoology. 20: 406 – 416.

_______. Leiter, J.M.E., Li, X. and Palese, P. 1991. Positive Darwinian Evolution in Human Influenza A Viruses. Proc. Nat. Acad. Sci., 88. 4270 – 4274.

_______. 1995. Uses for Evolutionary Trees. Phil. Trans. Royal Society London B. 349. 93 – 102.

_______. Bush, Robin M., Bender, Catherine A. Subbarao Kanta, Nancy J. Cox. 2000. On Predicting the evolution of human influenza A, Journal of Heredity. 91(3): 183 – 185.

Flach, Peter A. and Antonis C. Kakas Eds. 2000. Abduction and Induction: Essays on their Relation and Integration. Dordrecht, Netherlands: Kluwer Academic Publishers.

Fleischaker, Gail. 1988. Autopoeisis: the System, Logic, and Origin of Life. Boston, MA. Boston University Professors Program, The Graduate School.

Fodor, Jerry and Piatelli-Palmarini, Massimo. 2010. What Darwin Got Wrong. Farrar, Strauss, and Giroux.

Foerster, Heinz von. 1973. “On Constructing a Reality.” Address given on April 17 to the Fourth International Environmental Design Research Association Conference at the College of Architecture, Virginia Polytechnic Institute, Blacksburg, VA.

Fontana, Walter. 2001. “The Evolution of Novelty.” BEACON Paper. September.

_______. Modeling ‘Evo-Devo’ with RNA. BioEssays. 24:1164–1177.

Foucault, Michel. 1970.  The Order of Things. N.Y.: Tavistock Publications.

Fox, S. 1986. “Molecular Selection and Natural Selection.” Quarterly Review of Biology. Vol. 61. No. 3. (Sept) 375-386.

Frazer, Sir James George. 1959. The New Golden Bough. NY: Criterion Books.

Friend, Tim. 2007. The Third Domain. The untold story of Archaea and the future of biotechnology. Washington, D.C. Joseph Henry Press.

Fuller, R. Buckminster. 1946 – 51. “A Comprehensive Anticipatory Design Science,” in “The Fuller Research Foundation,” reprinted 1967. No More Secondhand God. Carbondale, Ill.: Southern Illinois University Press.

_______. 1961. “World Game” proposed as core curriculum for Southern Illinois University Edwardsville. Re-presented in 1964 for the 1967 International and Universal Exposition in Montreal, Quebec. Incorporated into the World Game Institute, 1972. Assets purchased by o.s. Earth, 2001.

_______.  1963 a. Ideas and Integrities: a Spontaneous Autobiographical Disclosure. Edited by Robert W. Marks. N.Y.: Collier Books.

_______. 1963 b. No More Secondhand God and Other Writings. Garden City: Doubleday.

_______. 1963 c. [1938]. Nine Chains to the Moon. Southern Illinois University.

_______. 1969. operating manual for spaceship earth. Southern Illinois University Press.

_______. 1970. I seem to be a verb. NY: Bantam Books. Press. N.Y.: Doubleday Anchor Books.

_______. 1982. Guinea Pig B* (for Bucky) his last manuscript before his death.

Fuller, R. Buckminster and Applewhite, E. J. 1975. Synergetics. New York: Macmillan.

Funes, Pablo, Belinda Orme, and Eric Bonabeau. 2004. “Shaping collective behavior: an exploratory design approach.” Artificial Life IX.

Gánti, Tibor. 2003. The Principles of Life. Oxford University Press.

Gerhart, John C. and Marc W. Kirschner. 1997. Cells, Embryos, and Evolution: Toward a cellular and developmental understanding of phenotypic variation and evolutionary adaptability. Boston: Blackwell Science.

Gerhart, John C. and Marc Kirschner. 2007. The theory of facilitated variation. PNAS. May 9.

Gill, S.P. (Zann). 1986. “The Paradox of Prediction.” Daedalus: Journal of the American Academy of Arts and Sciences. 115.3: 17 – 49, republished by Academic Press.

Gill, Zann. December 1999. A Design Method Using Darwinian Principles for Collaborative Problem-Solving Environments (CPSEs). CSCL99 (Computer-Supported Cooperative Learning), Stanford University.

_______. 2001. Webtank Design: intranet support for collaborative problem-solving; HCI International 2001; published in Systems, Social, and Internationalization: Design Aspects of Human Computer Interaction vol 2. edited by Michael Smith and Gavriel Salvendy. N.J.: Lawrence Earlbaum Assoc. 2001. p. 292-6.

_______. 2001. Webtanks: Tools for Learning by Design. Siggraph.

_______. 2002. “Origin of Life: Case Studies of Hypothesis Construction.” #51. ISSOL 2002.

_______. 2002. Designing a Think Tank to Study Design paper #4941 AIAA Space Architecture Symposium. Houston, Texas. Section: Design Analysis, Methods, & Theory for Space Architecture.

_______. 2002. Webtank  (think tank on the web) and the management of organizational complexity. New England Complex Systems Institute. 4th International Conference on Complex Systems (ICCS).

Gilson, Etienne. 1984. From Aristotle to Darwin and Back Again, trans. John Lyon. Notre Dame, IN: University of Notre Dame Press.

Glasersfeld, Ernst von. 1976. Cybernetics and cognitive development. Cybernetics Forum. 8:115 –120.

_______. 1979. Cybernetics, experience, and the concept of self, in M. N. Ozer. Ed.A Cybernetic Approach to the Assessment of Children: Toward a More Humane Use of Human Beings. Boulder CO: Westview Press. 67 – 113.

Glickman, Matthew R. and Katia Sycara. 2000. Evolvability and Static vs. Dynamic Fitness. in Artificial Life 7 Workshop Proceedings.

Gobet, F., and Simon, H.A. 1996. The roles of recognition processes and look-ahead search in time-constrained expert problem solving: Evidence from grand-master-level chess. Psychological Science. 7 (1) 52 – 55.

Goldsmith, Edward. 1989. “Gaia and Evolution.” The Ecologist. 19: 4.

Goldstein, Alan H. 2006. “I, Nanobot.” Salon.com. March 9.

Goodman, Nelson. 1983. Fact, Fiction, and Forecast. Cambridge, MA: Harvard University Press.

Goodwin, Brian. 2001. How the Leopard Changed its Spots: The Evolution of Complexity. Princeton University Press.

Goodwin, B. and P. Saunders, Editors. 1989. Theoretical Biology: Epigenetic and Evolutionary Order from Complex Systems. Edinburgh: Edinburgh University Press.

Gould, S. J. and S. Vrba. 1982. “Exaptation—a missing term in the science of form.” Paleobiology 8: 4-15.

Gould, Stephen Jay. 1977. “On heroes and fools in science.” In S. J. Gould. Ever Since Darwin. NY: Dutton. 201 – 206.

_______. 1982. The Panda’s Thumb. NY: WW Norton.

_______. 1989. Wonderful Life: The Burgess Shale and the Nature of History. NY: W. W. Norton.

_______. 1992. “Impeaching a self-appointed judge.” Scientific American. July 118–121.

_______. 2007[1993]. Eight little piggies. Vintage Books. ISBN 978-0-099-50744-4

_______. 1997a. “Non-overlapping Magisteria.” Natural History. 106. 2:16–22, 60–62.

_______. 1997b. Darwinian Fundamentalism. The New York Review of Books. June 12. Volume 44, Number 10.

_______. 1999. The Use and Disuse of Lamarck. Natural History. February.

_______. 2002. The Structure of Evolutionary Theory. Cambridge: Belknap Press of Harvard University Press.

Gould, S. J. and R. C. Lewontin. 1979. “The Spandrels of San Marco and the Panglossian paradigm: A critique of the adaptionist programme.” Proc. Royal Soc. London. B 205:581–598.

Grandpierre, Attila. Fundamental Complexity Measures of Life. 2009. In: Joseph Seckbach & Richard Gordon Editors. Divine Action and Natural Selection: Science, Faith and Evolution. London: World Scientific. p. 566 – 616.

Grant, Peter. 1991. Natural Selection and Darwin’s Finches. Scientific American. October. 82 – 87.

Gray, Asa. 1876. Darwiniana. NY: D. Appleton.

Grim, Patrick, Evan Selinger, Robert Rosenberger, Randy Au, Nancy Louie, and John Connoll. 2004. “Reducing Prejudice: A Spatialized Game-Theoretic Model for the Contact Hypothesis.” Artificial Life IX.

Grobstein, Paul. 1988. “From the Head to the Heart: Some thoughts on similarities between brain function and morphogenesis, and on their significance for research methodology and biological theory.” Experientia 44; 960 – 971.

Gruber, Howard E. 1974. Darwin on Man: A Psychological Study of Scientific Creativity. N.Y.: E.P. Dutton.

Hadamard, Jacques. [1945] 1954. Psychology of Invention in the Mathematical Field. Originally published by Princeton University Press. Reissued by Dover.

Haken, Hermann. 2004. Synergetics: Introduction and Advanced Topics. Berlin: Springer.

Haken, Hermann. 2006. Information and Self-organization. N.Y. Springer.

Haldane, J.B.S. 1924 [1923]. Daedalus or Science and the Future, a paper read to the Heretics, Cambridge on February 3. London: Kegan Paul, Trenh, Trubner & Co. Ltd.

JBS Haldane. 1932. The Causes of Evolution. NY: Harper and Row. Review by Cosma Shalizi.

Hamilton, W.D. 1964. The genetical evolution of social behaviour I and II. Journal of Theoretical Biology. 7: 1-16 and 17-52.

Hardin, Garrett. 1968. The Tragedy of the Commons. Science. 162: 1243 – 48.

_______. 1971. “Genetic Consequences of Cultural Decisions in the Realm of Population.” Paper prepared for the symposium on Human Evolution: Past, Present, and Future. American Museum of Natural History. NYC. November 18 – 20, 1971.

Harman, Oren Solomon. 2009. “Neo-Darwinism and Random Variation, or Why It’s Important to Read Darwin Carefully.” In:
Joseph Seckbach & Richard Gordon Editors. Divine Action and Natural Selection: Science, Faith and Evolution. London: World Scientific.

Harth, E. 1976. “Visual Perception: A Dynamic Theory” Biol. Cybernetics. NY: Springer Verlag. 22:169 – 180.

_______. 1982. Windows on the Mind. N.Y.: Morrow.

_______. 2005. The Creative Loop: How the Brain Makes a Mind. N.Y.: Helix Books.

Harvey, Inman. 2004. “Homeostasis and Rein Control: From Daisyworld to Active Perception.” Artificial Life IX.

Haugeland, John. Ed. 1982. Mind Design: Philosophy, Psychology, Artificial Intelligence.  Cambridge, MA:  M.I.T. Press.

_______. 2000. Mind Design II: Philosophy, Psychology, Artificial Intelligence.  Cambridge,  MA:  M.I.T. Press.

Hawkins, Jeff with Sandra Blakeslee. 2004. On Intelligence: How a New Understanding of the Brain will Lead to the Creation of Truly Intelligent Machines. NY: Henry Holt.

Hebb, D.O. 1949. The organization of behavior: a neuropsychological theory. NY: Wiley.

Heisenberg, Werner. 1958. Physics and Philosophy N.Y.: Harper and Row, Harper Torchbooks.

_______. 1972. Physics and Beyond: Encounters and Conversations, N.Y.: Harper Torchbooks.

Hempel, Carl. G. 1965. Aspects of Scientific Explanation and Other Essays in the Philosophy of Science. N.Y.: Collier-Macmillan Ltd.

Hinton, G.E. and SJ Knowlan. 1987. How Learning Can Guide Evolution. Complex Systems. 1: 495 – 502.

Hodges, Andrew. 1999. Turing. N.Y.: Routledge.

Hoelzer, Guy, John Pepper, and Eric Smith. 2006. On the Logical Relationship Between Natural Selection and Self-Organization. Journal Compilation. European Society for Evolutionary Biology.

Hofstadter, Douglas R. 1979. Gødel, Escher, Bach: an Eternal Golden Braid. N.Y.: Basic Books.

_______. 1985. Metamagical Themas: Questing for the Essence of Mind and Pattern.. N.Y.: Bantam Books.

Hofstadter, Douglas R. and the Fluid Analogies Research Group. 1995. Fluid Concepts and Creative Analogies: Computer Models of Fundamental Mechanisms of Thought. N.Y.: Basic Books.

Hofstadter, D. R. and M. Mitchell. 1994. The Copycat project: A model of mental fluidity and analogy-making. In K. Holyoak and J. Barnden Eds. Advances in Connectionist and Neural Computation Theory. vol 2: Analogical Connections. Norwood, NJ: Ablex Publishing Corporation.

Hofstadter, Richard. 1944. Social Darwinism in American Thought. Philadelphia: University of Pennsylvania Press.

Holland, John H. 1993. [1975]. Adaptation in Natural and Artificial Systems. Cambridge, MA: M.l.T. Press.

_______. Emergence: From Chaos to Order. NY: Perseus Books. ISBN 0-201-14943-5.

_______. 2003. Challenges for Agent-based Modeling.

Holton, Gerald. 1988. Thematic Origins of Scientific Thought. Cambridge, MA: Harvard University Press, 2nd ed.

_______. 1998. The Scientific Imagination. Cambridge, MA: Harvard University Press.

Howsman, Thomas G., Daniel O’Neil, and Michael A. Craft. 2004. A Stigmergic Cooperative Multi-Robot Control Architecture. NASA Marshall Space Flight Center.

Huberman, B.A. and N.S. Glance. 1993. Evolutionary Games and Computer Simulations. Proceedings of the National Academy of Sciences. USA. 90.7715 – 7718.

Hull, D. 1973. Darwin and his Critics. Chicago and London: The University of Chicago Press.

Hume, David. 2006 [1748]. An Enquiry Concerning Human Understanding (Section 10).

Hutchins, Edwin. 1999. Cognition in the Wild, Cambridge. M.l.T. Press.

Huxley, Thomas Henry. 1920. [1894]. Evolution and Ethics and other Essays. N.Y.: The Humboldt Publishing Company.

_______. 1937. Autobiography and Selected Essays. Boston: Houghton Mifflin Co.

_______. 1859. Letter to Darwin, promising to come to his defense. November 23.

Hyman, S. E. 1966. The Tangled Bank: Darwin, Marx, Frazer, and Freud. N.Y.: The Universal Library, Grosset and Dunlap.

Ince, D.C. Ed. 1992. The Collected Works of A. M. Turing. Amsterdam: North-Holland.

Huxley, Julian. 1942. Evolution: The Modern Synthesis. London: Allen & Unwin.

Hyman, S. E. 1966. The Tangled Bank: Darwin, Marx, Frazer, and Freud. N.Y.: The Universal Library, Grosset and Dunlap.




Ingber, Donald E. 1993. Cellular tensegrity: defining new rules of biological design that govern the cytoskeleton. Journal of Cell Science. 104. 613 – 627.

_______. 1998. The Architecture of Life: A universal set of building rules seems to guide the design of organic structures — from simple carbon compounds to complex cells and tissues. Scientific American. January.

_______. 2000. Problems and paradigms: The origin of cellular life. Bioessays.22:1160 – 1170. John Wiley & Sons Inc.

Ingber, Donald E., Steven R. Heidemann, Phillip Lamoureux, and Robert E. Buxbaum. 2000. Controversies in physiology: opposing views on tensegrity as a structural framework for understanding cell mechanics. J. Appl. Physiol. 89. 1663 – 1668.

Ingber, Donald E. 2003. Tensegrity I. Cell structure and hierarchical systems biology. Journal of Cell Science. 116 (7)1157 – 1173.

_______. 2003. Mechanosensation through integrins: Cells act locally but think globally. PNAS. February 18. vol. 100 no. 4. 1472 – 1474.

Jablonka, Eva and Lamb, Marion J. 1988. Meiotic pairing constraints and the activity of sex chromosomes. Journal of Theoretical Biology. 133 (1): 23–36. July 8. doi:10.1016/S0022-5193(88)80022-5. PMID 3226141.

_______. 1989. The inheritance of acquired epigenetic variations. Journal of Theoretical Biology. 139 (1): 69–83. July 10.
doi:10.1016/S0022-5193(89)80058-X. PMID 2593687.

_______. 1995. Epigenetic Inheritance and Evolution: the Lamarckian Dimension. Oxford University Press. ISBN 0198540639, ISBN 9780198540632

_______. 2005 [1995]. Evolution in Four Dimensions: Genetic, Epigenetic, Behavioral, and Symbolic Variation in the History of Life. MIT Press. ISBN 0262101076

_______. 2006. The evolution of information in the major transitions. Journal of Theoretical Biology. 239 (2): 236–46. March 21. doi:10.1016/j.jtbi.2005.08.038. PMID 16236324.

_______. June 2007. The expanded evolutionary synthesis—a response to Godfrey-Smith, Haig, and West-Eberhard. Biology and Philosophy 22 (3): 453–472. doi:10.1007/s10539-007-9064-z. ISSN 0169-3867.

_______. 2008. “The evolution of heteromorphic sex chromosomes. Biological Reviews.  65 (3) 21 January. 249–276. doi:10.1111/j.1469-185X.1990.tb01426.x. ISSN 0169-3867. PMID 2205302. (First published 1990).

Jacob, F. et J. Monod. 1961. Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol. 3. 318 – 356.

Jaspers, Karl. Kant [from The Great Philosophers, Volume 1]. Ed. Hannah Arendt. Trans. Ralph Manheim. N.Y.: Harcourt Brace. 1962.

Jeans, James. 1930. The Mysterious Universe. London: Penguin.

Johnson, N., S. Rasmussen. C. Joslyn, L. Rocha, S. Smith, and M. Kantor. 1998. “Symbiotic Intelligence: Self-organizing knowledge on distributed networks driven by human interactions.” Artificial Life VI.

Johnson, Norman L. 2000. Developmental Insights into Evolving Systems: Roles of Diversity, non-Selection, Self-Organization, Symbiosis in Artificial Life  VII.

Jones, Steve. 2000. Darwin’s Ghost: The Origin of Species Updated. N. Y.: Random House.

Jordanova, L.J. 1984. Lamarck. N.Y. Oxford University Press.

Joy, Bill. 2000. Why the future doesn’t need us. Wired Magazine. April.

Kampis, George and Laszlo Gulyas. 2004. “Sustained Evolution from Changing Interaction.” Artificial Life IX.

Kant, I. 1965 [1781]. Critique of Pure Reason. Trans. N. Kemp Smith. N.Y.: St. Martin’s Press.

Kasting, James F. 1998. The Carbon Cycle, Climate and the Long-Term Effects Of Fossil Fuel Burning. Consequences. Vol. 4. Number 1.

Kasting, J. F. 2008. Chapter 8: The primitive Earth. In Prebiotic Evolution and Astrobiology. J. T.-F. Wong and A. Lazcano, eds., Landes Bioscience, Austin, TX.

Kauffman, Stuart. 1969. “Metabolic stability and epigenesis in randomly constructed genetic nets.” Journal of Theoretical Biology.  22:437 – 467.

_______. 1991. “Antichaos and Adaptation.” Scientific American. August. 78 – 84.

_______. 1993. The Origins of Order: Self-Organization and Selection in Evolution.N.Y.: Oxford University Press.

_______. 1995. At Home in the Universe: The Search for the Laws of Self-Organization and Complexity. N. Y.: Oxford University Press.

_______. 2000. Investigations. Oxford University Press.

_______. 2008. Beyond Reductionism: Reinventing the Sacred. NY: Basic Books.

Kauffman, S.A. and R.G. Smith. 1986.  Adaptive Automata Based on Darwinian Selection. Physica D.

Kauffman, S.A. and S.A. Levin. 1987. Towards a general theory of adaptive walks on rugged landscapes. Journal of Theoretical Biology. 128(1). 1-45.

Kauffman, Stuart A. and Sonke Johnsen. 1991. Coevolution to the Edge of Chaos: Coupled Fitness Landscapes, Poised States, and Coevolutionary Avalanches. J. Theor. Biol. 149. 567-505.

Keller, Evelyn Fox. 1983. A Feeling for the Organism: The Life and Work of Barbara McClintock. WH Freeman.

_______. 2000. The Century of the Gene. Harvard University Press.

_______. 2002. Making Sense of Life : Explaining Biological Development with Models, Metaphors, and Machines. Harvard University Press.

Kelly, Kevin. “Out of Control: The New Biology of Machines.” 1995 reprint [1994]. Fourth Estate: London. 470 – 471.

Kenyon and Steinman. 1969. Biological Predestination. N. Y.: McGraw-Hill.

Keynes, R. 2001. Annie’s Box: Charles Darwin, his Daughter, and Human Evolution. Fourth Estate: London (American edition January 2002)

Kiedrowski, Guenter von; Eckardt, Lars-Henning; Naumann, Kai; Pankau, Wolf Matthias; Reimold, Malte; Rein, Michael. 2003. Toward replicatable, multifunctional, nanoscaffolded machines. A chemical manifesto. Pure and Applied Chemistry. 75(5). 609 – 619.

Kimura, Motoo. 1968. Evolutionary rate at the molecular level. Nature 217 (5129): 624–626.

Kimura, M. 1983. The Neutral Theory of Molecular Evolution. Cambridge Uni Press.

Kirschner, Marc and John C. Gerhart. 1998. Evolvability (Perspective). Proceedings of the National Academy of Science. USA 95: 8420-8427.

_______. (1998). Comment on “Epigenetic inheritance in evolution.” [Commentary]Journal of Evolutionary Biology. 11: 213-217.

_______. 2005. The Plausibility of Life: Resolving Darwin’s Dilemma. New Haven: Yale University Press.

_______. 2005. The Meaning of Systems Biology (commentary). Cell. 121:503-504.

Kitcher, Philip. 1982. Abusing Science. Cambridge, MA: M.I.T. Press.

_______. 1998. “A Plea for Science Studies” in Koertge, Noretta, Ed. A House Built on Sand: Exposing Postmodernist Myths About Science. Oxford University Press.

Kuhn, Thomas S. 1970. The Structure of Scientific Revolutions. Second Enlarged Edition. University of Chicago Press.

Kump, Lee, James Kasting, and Robert Crane. 2003. The Earth System. Second Edition. CHIPS Environmental Science Books. Waco, Texas.

Kurzweil, Ray. 1999. The Age of Spiritual Machines: When Computers Exceed Human Intelligence. N.Y.: Viking.

Lack, David. 1953. “Darwin’s Finches.” Scientific American. April. 68.

Laing, R. 1976. Automaton introspection. Journal of Computer and System Sciences.13(2):172 – 183.

Lakoff, George with Mark Johnson. 1980. Metaphors We Live By. University of Chicago Press.

Lakoff, George and Mark Johnson. 1999. Philosophy in the Flesh. N.Y.: Basic Books.

Lakoff, George and Rafael E. Nunez. 2000. Where Mathematics Comes From: How the Embodied Mind Brings Mathematics into Being. N.Y.: Basic Books.

Lamarck, J.B. 1984[1809]. Zoological Philosophy: An Exposition with regard to the Natural History of Animals. With the Eulogy by Georges Cuvier. trans. Hugh Elliot. University of Chicago Press.

_______. 1817. “Homme.” In Nouveau dictionnaire d’histoire naturelle. New Ed. Paris: Déterville 15:271.

Langton, Christopher. 1989. Artificial Life. Redwood, CA: Addison-Wesley.

Langton, C.J. 1992. “Life at the edge of Chaos.” Artificial Life II.

Latour, Bruno and Steve Woolgar. 1979. Laboratory Life: The Social Construction of Scientific Facts. London: Sage.

Laudan, Larry. 1990. Science and Relativism.

Lawson, Hilary and Lisa Appignanesi eds. 1989. Dismantling Truth: Reality in the Post-Modern World. London: Weidenfeld and Nicholson.

Lenoir, Tim. 1982. The Strategy of Life: Teleology and Mechanics in Nineteenth Century German Biology. Dordrecht, Netherlands: Reidel.

Lenski, Richard E., Charles Ofria, Robert T. Pennock and Christoph Adami. 2003. The evolutionary origin of complex features. Nature 423. 139-144. May 8.

Lenski, R. E. 2006. E. coli as a model organism in evolutionary genetics. in C.W. Fox and J.B. Wolf, eds. Evolutionary Genetics: Concepts and Case Studies. Oxford University Press: New York. 485 – 487.

Lenski, R.E., J.E. Barrick, and C. Ofria. 2006. Balancing robustness and evolvability. PLoS Biology 4: e428.

Lerena, P. 2000. Mate Choice: simple or Complex? Artificial Life  VII.

Letelier, Juan-Carlos, Jorge Soto-Andrade, Flavio Guîñez-Abarzua, Athel Cornish-Bowden and Marîa Luz Cårednas. 2004. “Metabolic Closure in (M,R) systems.”Artificial Life IX.

Lewin, R. 1992. Complexity: Life at the Edge of Chaos. NY: Macmillan.

Lichtenthaler, Frieder W. 2003. 100 Years “Schlüssel-Schloss-Prinzip”: What Made Emil Fischer Use this Analogy? Article first published in Wiley online: 22 Dec 2003. DOI: 10.1002/anie.199423641

Lindahl, B I B. 1997. Consciousness and biological evolution. Journal of Theoretical Biology. 187:613-629.

Lipson, Hod and Jordan Pollack. 2000. Evolving Physical Structures. Artificial Life VII.

Longo, Giuseppe. 2007. Laplace, Turing and the “imitation game” impossible geometry: randomness, determinism and programs in Turing’s test. In: Epstein, R., Roberts, G., & Beber, G.   Eds. The  Turing  Test  Sourcebook: Philosophical  and  Methodological  Issues  in  the  Quest  for  the  Thinking  Computer.   Dordrecht,  The Netherlands:  Kluwer.

Lorenz, Konrad. 1977. Behind the Mirror: a search for the natural history of human knowledge. translated by Ronald Taylor, London: Methuen and Company Ltd.

Lovejoy, Arthur O. The Great Chain of Being: A Study of the History of an Idea. Cambridge, MA: Harvard University Press. 1936.

Lovelace, Mary Caroline, Countess of (Ada Augusta). 1842. “Translator’s Notes to an Article on Babbage’s Analytical Engine.” Scientific Memoirs. R. Taylor, Ed. 3. 691 – 731.

Lovelock, J. E. 1972. Gaia as seen through the atmosphere. Atmos. Environ. 6: 579 – 580.

_______. 1979. Gaia: A New Look at Life on Earth. Oxford University Press.

_______. 1995. The Ages of Gaia: A Biography of Our Living Earth. Oxford University Press.

_______. 2007. The revenge of Gaia: Earth’s climate crisis and the fate of humanity. U.S. ed. New York: Basic Books.

_______. 2009. The vanishing face of Gaia : a final warning. London, New York: Allen Lane.

Lovelock, J. and L. Margulis. 1974. Atmospheric homeostasis by and for the biosphere: the Gaia hypothesis. Tellus. 26:2 – 10.

Lovelock, J. and Watson, A.J. 1983. Biological homeostasis of the global environment: the parable of Daisyworld. Tellus. 35B:284-289.

Maes, Patti. Editor. 1991. Designing Autonomous Agents: Theory and Practice from Biology to Engineering and Back. M.I.T. Press.

Margolis, E. Eric and Stephen Laurence. 1999. Concepts: Core Readings. Cambridge, MA: MIT Press.

Margulis, Lynn, Dorion Sagan. 1986. Microcosmos. Summit Books. New York.

_______. 1997. Slanted Truths: Essays on Gaia, Symbiosis, and Evolution. N.Y.: Springer-Verlag.

_______. 2002. Acquiring Genomes: A Theory of the Origins of Species. N.Y.: Basic Books.

Mattiussi, Claudio and Dario Floreano. 2004. “Connecting Transistors and Proteins.”Artificial Life IX.

Maturana, H. R. 1970. Biology of Cognition. Urbana, Illinois: University of Illinois Press.

Maturana, H. & F. Varela. Autopoiesis and Cognition: The realization of the living. D. Reidel, 1980.

Mayr, Ernst. 1942. Systematics and the Origin of Species. N. Y.: Columbia University Press.

_______. 1960. The Emergence of Evolutionary Novelties. In Tax, S., ed. Evolution after Darwin, Vol. I. Chicago, IL: University of Chicago Press.

_______. 1976. Evolution and the Diversity of Life: Selected Essays. Cambridge, MA: Belknap Division of Harvard University Press. Accident or Design: The Paradox of Evolution. 30 – 43.

_______. 1982. The Growth of Biological Thought:  Diversity, Evolution, and Inheritance. Cambridge, MA: Belknap Division of Harvard University Press.

_______. 1988. Toward a New Philosophy of Biology: Observations of an Evolutionist. Cambridge, MA: The Belknap Division of Harvard University Press.

Mayr, E. and Provine, W.B. 1998. The Evolutionary Synthesis: Perspectives on the Unification of Biology. Cambridge: Harvard University Press.

Maynard Smith, John. 1986. The Problems of Biology. Oxford University Press.

Maynard Smith, John and Eørs Szathmary. 1995. The Major Transitions in Evolution. Oxford University Press.

McClintock, Barbara. 1984. The significance of responses of the genome to challenge. Science. 226: 792-801.

McKay, C.P. 1996. Oxygen and the rapid evolution of life on Mars, In Chemical Evolution: Physics of the Origin and Evolution of Life. Edited by J. Chela-Flores and F. Raulin, Kluwer, 177 – 184.

_______. 1997. “The search for life on Mars.” Origins Life Evol. Biosphere. 27:263-289.

Mclaughlin, P. 1990. Kant’s Critique of Teleology in Biological Explanation. Lampeter: Edwin Mellen Press.

McLaughlin, A. 2000. Discussion of Beneath the Surface: Critical Essays in the Philosophy of Deep Ecology. edited by Eric Katz, Andrew Light, and David Rothenberg (Cambridge: MIT Press, 2000). American Philosophical Association, Society for Philosophy and Technology, Dec. 28, 2000.

Medler, David A. 1998. A brief history of connectionism. Neural Computing Surveys.1(2): 18 – 72. Also in: Neural Computing Surveys. 1:61 – 101.[On-line serial]

Michie, Donald. 1970. Ed. Machine Intelligence. 5. Edinburgh U. Press, Communications of the ACM.

Michod, Richard E. and Denis Roze. 2000. A Multi-level Selection Theory of Evolutionary Transitions in Individuality. Artificial Life 7 Workshop Proceedings.

Mills, Susan and John Beatty. 1983. “The Propensity Interpretation of Fitness.”Conceptual Issues in Evolutionary Biology, ed. Elliott Sober, M.I.T. Press. 36 – 57.

Minsky, Marvin. 1974. A Framework for Representing Knowledge. MIT-AI Laboratory Memo 306, June. Reprinted in The Psychology of Computer Vision, P. Winston (Ed.), McGraw-Hill, 1975. Shorter versions in J. Haugeland, Ed., Mind Design, MIT Press, 1981, and in Cognitive Science, Collins, Allan and Edward E. Smith (eds.) Morgan-Kaufmann, 1992.

_______. 1985. A Society of Mind. New York: Simon and Schuster.

Mitchell, M. 1993. Analogy-Making as Perception: A Computer Model. Cambridge, MA: MIT Press.

_______. 2001. Analogy-making as a complex adaptive system. In L. Segel and I. Cohen (editors), Design Principles for the Immune System and Other Distributed Autonomous Systems. New York: Oxford University Press.

_______. 2005. Self-awareness and control in decentralized systems. In Working Papers of the AAAI 2005 Spring Symposium on Metacognition in Computation. Menlo Park, CA: AAAI Press.

Monod, Jacques. 1971. Chance and Necessity. translated by A. Wainhouse. N.Y.: Knopf.

Morris, Simon Conway. 2003a. Life’s Solution: Inevitable Humans in a Lonely Universe. Cambridge University Press.

S. Conway Morris. 2003b. The Cambrian ‘explosion’ of metazoans and molecular biology: Would Darwin be satisfied? International Journal of Developmental Biology.47: 505.

Morowitz, Harold J. 2001. The Epistemic Paradox of Mind and Matter. Annals of the New York Academy of Sciences. 929:50 – 54.

_______. 2002a. The Emergence of Everything. Oxford University Press.

_______. 2002b. Beginnings of Cellular Life: Metabolism Recapitulates Biogenesis. New Haven: Yale University Press

Mytilinaios, Efstathios, Mark Desnoyer, David Marcus, and Hod Lipson. 2004. “Designed and Evolved Blueprints for Physical Self-Replicating Machines.” Artificial Life IX.


Nagel, Ernest. 1959. The Structure of Science: Problems in the Logic of Scientific Explanation. British Journal for the Philosophy of Science. 10 (39).

Neumann, John von. 1947. “The Mathematician” in The Works of the Mind. Ed. R. B. Heywood. Chicago. University of Chicago Press.

_______. 1966. in A. Burks: Theory of Self-Reproducing Automata. Urbana, Illinois: University of Illinois Press.

Newell, Allen. Learning, Generality and Problem Solving. IFIP Congress 1962: 407 – 412.

_______. 1969. Heuristic programming: Ill-structured problems in Progress in Operations Research: Relationship Between Operations Research and the Computer. J. Aronofsky, Ed., vol. 3. New York: John Wiley & Sons. 360 – 413.

Nii, H. Penny. “Blackboard Systems.” The Handbook of Artificial Intelligence. Vol. IV Editors: Avron Barr, Paul R. Cohen and Edward A. Feigenbaum. Addison-Wesley Publishing Company Inc. 1989. 6-69.

Noble, Jason and Manuel de Pinedo. 2004. Mechanistic and ecological explanations in agent-based models of cognition in: Pollack, J, Bedau, M, Husbands, P, Ikegami, T & Watson, R A (editors) Artificial Life IX Proceedings of the Ninth International Conference on the Simulation and Synthesis of Living Systems. MIT Press / Bradford Books. 528 – 533.

Nowak M. and P. Schuster. 1989. Error thresholds of replication in finite populations. Mutation frequencies and the onset of mullers ratchet. Journal of Theoretical Biology. 137: 375 – 395.

Nowak M.A., R.M. May. 1992. Evolutionary games and spatial chaos. Nature. 359: 826 – 829.

Nowak M. and K. Sigmund. 1989. Oscillations in the evolution of reciprocity. Journal of Theoretical Biology. 137: 21 – 26.

_______. 1993. A strategy of win-stay, lose-shift that outperforms tit for tat in Prisoner’s Dilemma. Nature. 364: 56 – 58.

_______. 1993. Chaos and the evolution of cooperation. Proceedings of the National Acad Sci USA 90: 5091 – 5094.

Nowak M.A. S Bonhoeffer, RM May. 1996. Robustness of cooperation. Nature 379: 125 – 126

_______. 2004. Prisoners of the Dilemma. Nature 427: 491.

_______. May R M, Sigmund K. 1995. The arithmetics of mutual help. Scientific American. 272. June. 76-81.

_______. 2000. Homo grammaticus. Natural History, 109. 36-44.

Ofria, Charles and Christoph Adami. 1999. Evolution of Genetic Organization in Digital Organisms. DIMACS Workshop on Evolution as Computation. January 11 – 12. Princeton University.

Olsson, Lars, Chrystopher L. Nehaniv, and Daniel Polani. 2004. Information Trade-offs and the Evolution of Sensory Layouts. Artificial Life IX.

Orgel, Leslie E. 1963. The Maintenance of the Accuracy of Protein Synthesis and its Relevance to Ageing. Proc Natl. Acad. Sci. USA. 49:517 – 521.

Øztürkeri, Can and Mathieu S. Capcarrere. “Emergent Robustness and Self-Repair through Developmental Cellular Systems.” Artificial Life IX.

Packard, Alpheus S. 1901. Lamarck, the Founder of Evolution: His Life and Work with translations of his writings on organic evolution. N.Y.: Longmans, Green, and Co.

Pagels, Heinz. 1988. The Dreams of Reason: The Computer and the Rise of the Sciences of Complexity. N. Y. Simon and Schuster.

Paley, William. 1802. Natural History: or, Evidences of the Existence and Attributes of the Deity, Collected from the Appearances of Nature.
Pargellis, A.N. 1996. The evolution of self-replicating computer organisms. Physica D 98. April. 111 – 127.

Pargellis, Andrew N., Bernard Yurke. 2000. Spontaneous Generation and Colony Formation in the Amoeba World. Artificial Life 7 Workshop Proceedings.

Pargellis, Andrew. 2001. Digital Life Behavior in the Amoeba World in Artificial Life 7:1 Winter.

Pattee, H. H. 1995a. “Artificial Life Needs a Real Epistemology.” In F. Moran et al. Editors. Advances in Artificial Life. Berlin: Springer. 23 – 38.

Pattee, H.H. 1995b. Evolving Self-Reference: Matter, symbols, and semantic closure. Communication and Cognition. Artificial Intelligence12 (1-2):9 – 28.

Pauli, W. 1955. The influence of archetypal ideas on the scientific theories of Kepler. The Interpretation of Nature and the Psyche. London: Routledge & Kegan Paul.

Peirce, Charles Sanders. 1893. Evolutionary Love. The Monist. Final paper in a series of five. 3:176-200. Paragraph 6.293.

_______. 1934. Collected Papers of Charles Sanders Peirce. vol. 5. Ed. Charles Hartshorne and Paul Weiss. Harvard University Press.

_______. 1955. Philosophical Writings of Peirce. Ed. Justus Buchler. N.Y.: Dover.

Piaget, Jean. 1985. The Equilibration of Cognitive Structures: The Central Problem of Intellectual Development, translated by Terrance Brown and Kishore Julian Thampy. Chicago, IL: University of Chicago Press.

Pietsch, Theodore and W. Grobecker. 1978. The Compleat Angler: Aggressive Mimicry in an Antennarid Anglerfish. Science. 201.

Pigliucci, Massimo. Phenotypic Integration. 2003. A collection of technical essays on the evolution of complex biological organs. Oxford University Press.

Pigliucci, Massimo and Jonathan Kaplan. 2006. Making Sense of Evolution: A philosophical examination of the fundamental concepts of evolutionary theory and practice. Chicago University Press.

Pirie, N. W. 1937. “The meaninglessness of the terms life and living.” In J. Needham and D. E. Green. Perspectives in Biochemistry. Cambridge University Press, Cambridge.

Planck, Max. 1932. Where Is Science Going?, trans. J. Murphy. N.Y.: W.W. Norton and Co.

Poincaré, H. Chance. 1988. In J. Newman Ed. The World of Mathematics vol. 2. Redman, WA: Tempus. 1359-72.

Popper, Karl Raimond. [1935] 1959. The Logic of Scientific Discovery. London: Hutchinson.

_______. 1963. Conjectures and Refutations. London: Routledge.

_______. 1966. Of Clouds and Clocks: An Approach to the Problem of Rationality and the Freedom of Man. The Compton Memorial Lecture presented at Washington University. April 21, 1965. Washington University Press.

Prigogine, I. and I. Stengers. 1989. Order Out of Chaos: Man’s New Dialog with Nature. N.Y.: Bantam Doubleday.

Rapoport, Anatol. 1991. Ideological commitments in evolutionary theories. Journal of Social Issues. Issues in Evolutionary Psychology. 47. 3: 83 – 100. Fall.

Rasmussen, Steen, Carsten Knudsen, Pasmus Feldberg, Morten Hindsholm. 1990. The coreworld: emergence and evolution of cooperative structures in a computational chemistry. Proceedings of the ninth annual international conference of the Center for Nonlinear Studies on Self-organizing, Collective, and Cooperative Phenomena in Natural and Artificial Computing Networks on Emergent Computation. North-Holland Publishing Co.

Rasmussen, S. L. Chen, N. Nilsson, and S. Abe. 2003. Bridging living and non-living matter. Artificial Life IX:269-316.

Ray, Tom. 1992. An Approach to the Synthesis of Life. Artificial Life II. Ed. C. Langton, C. Taylor, J. D. Farmer, and S. Rasmussen. Addison-Wesley. Evolution and Complexity. Complexity: Metaphors, Models, and Reality. Ed. G. Cowan, D. Pines, D. Meltzer. Santa Fe: Addison Wesley.

Ray, Thomas S. 2003. An evolutionary approach to synthetic biology: zen in the art of creating life. Advances in evolutionary computing: theory and applications. NY: Springer-Verlag.

Ray, Thomas S. and Joseph F. Hart. 2000. Evolution of differentiation in Multithreaded Digital Organisms. Artificial Life VII.

Reichenbach, Hans. 1951. The Logic of Scientific Discovery, Berkeley: University of California Press.

Reil, Torsten. 2000. Models of Gene Regulation – A Review. Artificial Life 7 Workshop Proceedings.

Ridley, Mark. 2001. The Cooperative Gene. New York: The Free Press. Simon and Schuster.

Ridley, Matthew. 1997. The Origins of Virtue, Human Instincts and the Evolution of Cooperation. NY: Viking.

Ritvo, Harriet. 1997. The Platypus and the Mermaid, and Other Figments of the Classifying Imagination. Harvard University Press.

Rocha, L. M., Editor. 2001. “The Physics and Evolution of Symbols and Codes: Reflections on the Work of Howard Pattee.” Special issue of BioSystems. 60 (1 – 3).

Rocha, Luis Mateus. 2004. “Evolving Memory: Logical Tasks for Cellular Automata.” Artificial Life IX.

Roe, Anne and George Gaylord Simpson. eds. 1958. Behavior and Evolution. New Haven: Yale University Press.

Ronald, M., M. Sipper, and M.S. Cascarrere. Testing for Emergence in Artificial Life. Advances in Artificial Life. 13 – 20. Springer. 1999.

Rosen, R. 1958a. A relational theory of biological systems. Bull. Math. Biophys. 20:245 – 317.

______. 1958b. The representation of biological systems from the standpoint of the theory of categories. Bull. Math. Biophys. 20:317 – 341.

______. 1959. A relational theory of biological systems II. Bull. Math. Biophys. 21:109 – 128.

______. 1972. Some relational cell models: The metabolism-repair system. In Rosen, R. Editor. Foundations of Mathematical Biology. New York: Academic Press.

______. 1991. Life Itself. New York: Columbia University Press.

______. 2000. Essays on Life Itself. New York: Columbia University Press.

Rosenberg, S.M. 2001. “Evolving Responsibility: Adaptive Mutation.” Nature Reviews Genetics 2. 1382-1383.

Ruiz-Mirazo, Pedro, Juli G. Pereto, and Alvaro Moreno. 2002. Proposal for a Universal Definition of Life. ISSOL 2002.

Ruse, Michael. 1999. Mystery of Mysteries: Is Evolution a Social Construction? Harvard University Press.

______. 2000. The Evolution Wars: A Guide to Debates. ACB-CLIO Inc. Santa Barbara, CA.

______. 2003. Darwin and Design. Harvard University Press.

Russell, Stuart and Peter Norvig. Eds. 2003. Artificial Intelligence: A Modern Approach. (Second Edition). N.J.: Prentice Hall.

Sagan, Carl. 1987. “The Burden of Skepticism” first published in Skeptical Inquirer. 12. Fall.

_______. 1998. “Life.” The New Encyclopedia Britannica. vol 22. Macropaedia. 15th edition.

Sasselov, D. 2012. The Life of Super-Earths: How the Hunt for Alien Worlds and Artificial Cells Will Revolutionize Life on Our Planet. NY: Basic Books.

Scheffler, Israel. 1963. The Anatomy of Inquiry: Philosophical Studies in the Theory of Science. N.Y.: Alfred A. Knopf.

Schlichting, Carl D. and Massimo Pigliucci. 1998. Phenotypic Evolution: A Reaction Norm Perspective. Sunderland, MA: Sinauer Associates Publishers.

Schneider, S.H., J.R. Miller, E. Crist, and P.J. Boston. 2004. Scientists Debate Gaia: the next century. Cambridge: MIT Press.

Schrødinger, Erwin. 1922. What is Natural Law? Inaugural Address delivered at the University of Zurich, December.

_______. 1967 [1944]. What is Life? Cambridge University Press.

Schönfisch, Birgitt and André de Roosb. 1999. Synchronous and asynchronous updating in cellular automata. Biosystems. Elsevier Science Ireland Ltd. Volume 51. Issue 3. September. Pages 123-143.

Schuster, Peter and Walter Fontana. 1999. “Chance and necessity in evolution: lessons from RNA.” Physica D. 133. 427 – 453.

Selfridge, Oliver. 1959. Pandemonium: A paradigm for learning. In Symposium on the mechanization of thought processes. London: HM Stationary Office.

Sherrington, Sir Charles. 1951[1937-8]. Man on His Nature. Gifford Lectures. Cambridge University Press.

Shenhav, Barak, Ran Kafri, and Doron Lancet. 2004. Graded Artificial Chemistry in Restricted Boundaries based on the GARD (Graded Autocatalysis Replication Domain model). Artificial Life IX.

Sigmund K., E. Fehr, M A. Nowak. 2002. The economics of fair play. Scientific American. 286: 82 – 87.

Silverman, E. and Bullock, S. 2004. Empiricism in artificial life. In Pollack, J., Bedau, M, Takashi Ikegami, P. H. and Watson, R. A., Eds. Proceedings of the Ninth International Conference on Artificial Life. 534 – 539.

Simon, H. A. The Architecture of Complexity. Proceedings of the American Philosophical Society. 106(6). 467 – 482.

_______. 1990. Reason in Human Affairs. Stanford University Press.

_______. 1998. The Sciences of the Artificial. Cambridge: M.I.T. Press.

Simonton, Dean Keith. 1988. Scientific Genius: A Psychology of Science. Cambridge University Press.

_______. 1984. Genius, Creativity, & Leadership: Historiometric Inquiries. Harvard University Press.

Sipper, Moshe. 1994. “Fifty Years of Research on Self Replication: An Overview.” Artificial Life IV. The Artificial Self-Replication Page.

_______. 1997. Evolution of Parallel Cellular Machines: The Cellular Programming Approach. Heidelberg: Springer-Verlag.

_______. 2002. Machine Nature: The Coming Age of Bio-Inspired Computing, N.Y: McGraw-Hill.

Sipper, M. and J. A. Reggia. 2001. “Go forth and replicate.” Scientific American. 285. 2. 26 – 35. August.

Smil, Vaclav. 1997. Cycles of Life: Civilization and the Biosphere. NY: Scientific American Library.

Smith, Adam. 1790 [1759]. Sixth edition. The Theory of Moral Sentiments. London: A. Millar.

Smith, J. Maynard. 1975. The Theory of Evolution, 3rd Edition. Penguin.

Snelson, Kenneth. 1965. First patent on the tensegrity principle he discovered: Discontinuous Compression Structures. Patent #3,169,611. February.

Snow, C.P. 1993 [1959]. The Two Cultures. Cambridge University Press.

Sober, Elliott. 1983. “Holism, Individualism, and the Units of Selection.” Conceptual Issues in Evolutionary Biology. ed. Elliott Sober, M.I.T. Press.

Sober, E., & Wilson, D. S. 1998. Unto Others: The Evolution and Psychology of Unselfish Behavior. Cambridge, MA: Harvard University Press.

Solé, Ricardo and Brian Goodwin. 2000. Signs of Life: How Complexity Pervades Biology. N.Y.: Basic Books.

Spehmann, Hans. 1938. Embryonic development and induction. New Haven: Yale University Press.

Spencer, Herbert. 1864. Principles of Biology. 2 vols. London: Williams and Norgate.

Spronsen J.W. von. 1969. The Periodic Table of Elements: A History of the First hundred Years. Amsterdam: Elsevier.

Stadler, B. M. R., P. F. Stadler, G. Wagner and W. Fontana. 2001.The topology of the possible: Formal spaces underlying patterns of evolutionary change. Journal of Theoretical Biology. 213 (2), 241-274.

Stauffer, Andre and Moshe Sipper. 2002. “Interactive Self-Replicating, Self-Incrementing and Self-Decrementing Loops.” Alife VIII.

Steels, Luc. 1994 – 2010. Building Agents out of Autonomous Behavior Systems.

Stiemerling, Oliver and Armin B. Cremers. 2000. A Paleontological Perspective on Designing Adaptable Software Systems in Artificial Life 7 Workshop Proceedings.

Stites, Raymond. 1970. The Sublimations of Leonardo Leonardo, Washington, D.C.: The Smithsonian Institution Press.

Suzuki, H. 2000. Evolvability Analysis: Distribution of Hyperblobs in a Variable-Length Protein Genotype Space. Artificial Life VII.

Szilard, Leo. 1978. Leo Szilard: His Version of the Facts – Selected Recollections and Correspondence. Spencer R. Weart and Gertrud Weiss Szilard, editors. Cambridge Massachusetts: M.I.T. Press.

Szostak, J. W., D. P. Bartel, and P.L. Luisi. 2001. “Synthesizing Life.” Nature. 409: 387 – 390.


Thompson, J. N. (1994). The Coevolutionary Process. Chicago: University of Chicago Press.

Turing, A.M. 1936 – 7. On computable numbers with an application to the entscheidungsproblem. Proc. Lond. Math. Soc. Ser. 2. 42:230 – 265.

_______. 1939. ‘Systems of logic defined by ordinals’, Proc. Lond. Math. Soc., Ser. 2, 45: 161-228; also in (Davis 1965) and in (Gandy and Yates 2001). This was Turing’s Ph.D. thesis, Princeton University (1938).

_______. 1946. Proposed electronic calculator, report for National Physical Laboratory, Teddington; published in A. M. Turing’s ACE report of 1946 and other papers, eds. B. E. Carpenter and R. W. Doran, Cambridge, Mass.: MIT Press (1986); also in Ince 1992.

_______. 1947. ‘Lecture to the London Mathematical Society on 20 February 1947’, in A. M. Turing’s ACE report of 1946 and other papers, eds. B. E. Carpenter and R. W. Doran, Cambridge, Mass.: MIT Press (1986); also in Ince 1992.

_______. 1948. ‘Intelligent machinery’, report for National Physical Laboratory, in Machine Intelligence 7, eds. B. Meltzer and D. Michie (1969); also in Ince 1992.

_______. 1950. Computing, machinery, and intelligence. Mind. 51. 433 – 60. Reprinted in Collected Works. Also in Boden 1990, Ince 1992, and [Available online].

_______. 1970 [1948]. Intelligent Machinery, report submitted to the National Physical Laboratory. first published in Donald Michie, Ed. Machine Intelligence. 5. Edinburgh U. Press Communications of the ACM. 21 – 23.
Turner, J. S. 2002. The Extended Organism: The Physiology of Animal-Built Structures. Harvard University Press.

_______. 2007. The Tinkerer’s Accomplice: How Design Emerges from Life Itself. Harvard University Press.

_______. 2008. Gaia, Extended Organisms, and Emergent Homeostasis. In Scientists debate Gaia: the next century. Edited by Stephen H. Schneider, James R. Miller, Eileen Crist and Penelope J. Boston. Cambridge: The MIT Press. 57-71.

Tweney, R. D., M. E. Doherty, and M. Mynatt. Editors. 1981. On Scientific Thinking. NY: Columbia University Press.

Venable, F.P. 1896. The Development of the Periodic Law. Easton, PA: Chemical Publishing.

Varela, Francisco. 1979. Principles of Biological Autonomy. N.Y.: McGraw Hill/ Appleton Lange.

Vernadsky V.I., 1945. The Biosphere and the Noosphere. Scientific American. 33(1):1 – 12.

______. 1986[1929] The Biosphere [abridged from 1929 edition]. London: Synergetic Press.

von Neumann, John. 1966. Theory of Self-Reproducing Automata. Urbana, Illinois: University of Illinois Press. Vrba, E. S. and Gould, S. J. 1986. “The hierarchical expansion of sorting and selection.” Paleobiology. 12 (2): 217-228.

Vrba, E. S. 1993. “The Pulse That Produced Us.” Natural History 102 (5) 47-51.

Wächterhäuser, Günter. 1995. The Uses of Karl Popper. In Laura Dassow Walls. Seeing New Worlds: Henry David Thoreau and Nineteenth-Century Natural Science. University of Wisconsin Press. 177 – 189.

Waddington, Conrad. 1957. The Strategy of Genes. London: Allen and Unwin.

_______. 1976. Evolution in the Sub-Human World in Evolution and Consciousness. Edited by Erich Jantsch and Conrad Waddington, Reading, MA: Addison Wesley.

_______. 1977. The Process Theory of Evolution and Notes on the Evolution of Mind in Mind in Nature: Essays on the Interface of Science and Philosophy. Washington, D.C.: University Press of America.

Wade, Michael. 2000. J. Interaction in Metapopulations: Effects on Adaptation and Diversity. Artificial Life 7 Workshop Proceedings.

Wallace, Alfred Russel. 1889. Darwinism.

_______. 1905. My Life. London: Chapman Hall.

_______. 1911. The world of life: a manifestation of creative power, directive mind and ultimate purpose. 2nd ed. N.Y.: Moffat, Yard & Company.

Ward, Peter D. and Donald Brownlee. 2000. Rare Earth: Why Complex Life is Uncommon in the Universe. NY: Springer-Verlag.

Ward, Peter D. 2005. Life as We Do Not Know It: The NASA Search for (and Synthesis of) Alien Life. NY: Viking Penguin.

Ward, Peter D. and Donald Brownlee. 2000. Rare Earth: Why Complex Life is Uncommon in the Universe. NY: Springer-Verlag.

_______. 2003. The Life and Death of Planet Earth: How the New Science of Astrobiology Charts the Ultimate Fate of Our World. New York: Times Books. Henry Holt and Company.

Ward, Peter D. 2005. Life as We Do Not Know It: The NASA Search for (and Synthesis of) Alien Life. NY: Viking Penguin.

_______. 2007. Under a Green Sky: Global Warming, the Mass Extinctions of the Past, and What They Can Tell Us About Our Future. Washington: Smithsonian.

_______. 2009. The Medea Hypothesis: Is Life on Earth Ultimately Self-Destructive? Princeton University Press.

_______. 2010. The Flooded Earth: Our Future In a World Without Ice Caps. Basic Books: A Member of the Perseus Books Group.

Watson, A. and J. Lovelock. 1983. Biological homeostasis of the global environment: the parable of daisy-world. Tellus. 35B:284 – 9.

Watson, R.A. and J.B. Pollack. 1999. “How Symbiosis Can Guide Evolution.” Proceedings of the Fifth European Conference on Artificial Life. Ed. D. Floreano, JD Nicoud, F. Mondale. Springer.

Watson, R., T. Reil, J. Pollack. 2000. Mutualism, Parasitism, and Evolutionary Adaptation. Artificial Life VII.

Watson, R.A. 2006. Compositional Evolution: the Impact of Sex, Symbiosis, and Modularity on the Gradualist Framework of Evolution. MIT Press.Watzlawick, Paul. 1984. The Invented Reality. N.Y.: W.W. Norton Company.

Weiner, Jonathan. 1994. The Beak of the Finch: A Story of Evolution in Our Time. N.Y.: Alfred A. Knopf.

Weismann, A. 1893. The Germ Plasm: A Theory of Heredity. Trans. W. Newman Parker and Harriet Ronfeldt. N.Y.: Scribner.

West-Eberhard, Mary Jane. 1986. Alternative adaptations, speciation, and phylogeny (A Review). Proceedings of the National Academy of Sciences USA. Vol. 83. March. 1388-1392.

_______. 1989. Phenotypic Plasticity and the Origins of Diversity. Annual Review of Ecological Systems. 1989. 20:249-78.

_______. 1998. Evolution in the light of development al and cell biology, and vice versa. Proceedings of the National Academy of Sciences USA. Vol. 95. 8417– 8419, July.

_______. 2002. Development and selection in adaptive evolution. Trends in Ecology & Evolution Vol.17 No.2 February.

_______. 2003. Developmental plasticity and evolution. Oxford University Press.

_______. 2005. Developmental plasticity and the origin of species differences. Proceedings National Academy of Sciences USA. 102.

_______. 2007. Book review. Dancing with DNA and flirting with the ghost of Lamarck. Review of Evolution in Four Dimensions by Eva Jablonka and Marion J. Lamb.

_______. 2007. Are genes good markers of biological traits? In Biological Surveys. National Research Council Committee on Advances in Collecting and Utilizing Biological Indicators and Genetic Information in Social Science Surveys. Weinstein, M., Vaupel, J. W. and Wachter, K.W. Editors.Washington: National Academies Press. 175-193.

_______. 2008. Toward a Modern Revival of Darwin’s Theory of Evolutionary Novelty. Philosophy of Science. 75: 899-908.
Wheeler, John Archibald, “Law Without Law,” in Quantum Theory and Measurement, ed. John Archibald Wheeler and Wojciech Hubert Zurek, Princeton Series in Physics (Princeton, NJ: Princeton University Press, 1983). 200-1.

Wicken, J.S. 1987. Evolution, Thermodynamics and Information. N.Y.: Oxford University Press.

Wicken, J.S. 1998. Evolution and Thermodynamics: The New Paradigm. Systems Research and Behavioral Science. 15:365 – 372.

Wills, Peter R. “Stepwise evolution of molecular biological coding.” 2004. Artificial Life IX.

Wilson, D. S. 2002. Darwin’s Cathedral: Evolution, Religion and the Nature of Society. Chicago: University of Chicago Press.

Wilson, E.O. 1995. Naturalist. N.Y.: Warner Books.

_______. 1998. Attini: transition from hunter-gatherer to agriculture. Behavioral Ecology and Sociology. 7:143 –156.

_______. 1998. Consilience: The Unity of Knowledge. N.Y. Random House. Vintage Books.

_______. 2002. The Future of Life. N.Y. Random House. Vintage Books.

_______. 2005. “Intelligent Evolution: The consequences of Charles Darwin’s ‘one long argument.’” Harvard Magazine. Nov – December.

_______. Ed. 2006. From So Simple a Beginning: The Four Great Books of Charles Darwin. NY: W.W. Norton and Company.

Winograd, Terry and Fernando Flores. 1987. Understanding Computers and Cognition: A New Foundation for Design. Reading, MA: Addison Wesley.

Wolfram, Stephen. 2002. A New Kind of Science. Wolfram Media Inc.

Woody, Andrea and Clark Glymour. 2000. “Autonomy and Anti-reductionism: Missing Elements, What Might Philosophers of Science Discover in Chemistry? in Of Minds and Molecules: New Philosophical Perspectives on Chemistry. Ed. Nalini Bhushan and Stuart Rosenfeld. Oxford University Press.

Wright, Sewell. 1931. Evolution in Mendelian Populations. Genetics. 16. 147.